{"id":184,"date":"2020-07-22T14:32:43","date_gmt":"2020-07-22T11:32:43","guid":{"rendered":"https:\/\/systems.mbg.duth.gr\/?page_id=184"},"modified":"2022-11-10T10:49:46","modified_gmt":"2022-11-10T07:49:46","slug":"publications","status":"publish","type":"page","link":"https:\/\/systems.mbg.duth.gr\/index.php\/publications\/","title":{"rendered":"\u0394\u03b7\u03bc\u03bf\u03c3\u03b9\u03b5\u03cd\u03c3\u03b5\u03b9\u03c2"},"content":{"rendered":"
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  1. Foutadakis, S., Roupakia, E., Liakopoulos P., Kolovos P.<\/strong>#<\/sup><\/strong>, Kolettas E.#<\/sup><\/strong> (2022). An Expanded Interplay Network between NF-\u03baB p65 (RelA) and E2F1 Transcription Factors: Roles in Physiology and Pathology.\u00a0Cancers<\/strong>,\u00a014<\/em>, 5047. (#<\/sup>Corresponding authors<\/strong>)<\/li>\n
  2. Kiousi DE., Efstathiou C., Tegopoulos K., Mantzourani I., Alexopoulos A., Plessas S., Kolovos P.<\/strong>, Koffa M., Galanis A.\u00a0(2022). Genomic Insight Into\u00a0Lacticaseibacillus paracasei<\/em>SP5, Reveals Genes and Gene Clusters of Probiotic Interest and Biotechnological Potential.\u00a0 Front Microbiol<\/strong>.\u00a013:922689<\/em><\/li>\n
  3. Schilders KAA., Edel GG., Eenjes E., Oresta B., Birkhoff J., Boerema-de Munck A., Buscop-van Kempen M., Liakopoulos P., Kolovos P.<\/strong>, Demmers JAA., Poot R., Wijnen RMH., Tibboel D. and Rottier RJ. (2022) Identification of SOX2 Interacting Proteins in the Developing Mouse Lung With Potential Implications for Congenital Diaphragmatic Hernia.\u00a0 Pediatr <\/strong>10:881287<\/em><\/li>\n
  4. Tegopoulos K., Stergiou OS., Kiousi DE., Tsifintaris M., Koletsou E., Papageorgiou AC., Argyri AA., Chorianopoulos N., Galanis A.#<\/sup><\/strong> and Kolovos P.<\/strong>#<\/sup><\/strong> (2021) Genomic and Phylogenetic Analysis of Lactiplantibacillus plantarum L125, and Evaluation of Its Anti-Proliferative and Cytotoxic Activity in Cancer Cells. Biomedicines<\/strong> 9<\/em>, 1718. (#<\/sup>Corresponding authors<\/strong>)<\/li>\n
  5. Stergiou OS., Tegopoulos K., Kiousi DE., Tsifintaris M., Papageorgiou AC., Tassou CC., Chorianopoulos N., Kolovos P.<\/strong>#<\/sup><\/strong> and Galanis A.#<\/sup><\/strong> (2021) Whole-Genome Sequencing, Phylogenetic and Genomic Analysis of\u00a0Lactiplantibacillus pentosus\u00a0L33, a Potential Probiotic Strain Isolated From Fermented Sausages.\u00a0\u00a0Front. Microbiol.<\/strong>12<\/em>:746659. (#<\/sup>Corresponding authors<\/strong>)<\/li>\n
  6. Boltsis I., Grosveld F., Giraud G.#<\/sup>, and Kolovos P.<\/strong>#<\/sup><\/strong> (2021). Chromatin Conformation in Development and Disease. Front Cell Dev Biol<\/strong> 9<\/em>: 723859. (#<\/sup>Corresponding authors<\/strong>)<\/li>\n
  7. Giraud, G.*, Kolovos, P.*<\/strong>, Boltsis, I.*, van Staalduinen, J., Guyot, B., Weiss-Gayet, M., WV, I.J., Morle, F., and Grosveld, F. (2021). Interplay between FLI-1 and the LDB1 complex in murine erythroleukemia cells and during megakaryopoiesis. iScience<\/strong> 24<\/em>, 102210. (*Equal Contribution<\/strong>)<\/li>\n
  8. Kolovos, P.*<\/strong>, Nishimura, K.*, Sankar, A.*, Sidoli, S., Cloos, P.A., Helin, K., and Christensen, J. (2020). PR-DUB maintains expression of critical genes through FOXK1\/2- and ASXL1\/2\/3-dependent recruitment to chromatin and H2AK119ub1 deubiquitination. Genome Res. <\/strong>30<\/em>, 1119-1130 (*Equal Contribution<\/strong>)
    \n<\/strong><\/li>\n
  9. Birkhoff, J.C., Brouwer, R.W.W., Kolovos, P.<\/strong>, Korporaal, A.L., Bermejo-Santos, A., Boltsis, I., Nowosad, K., Hout, M., Grosveld, F.G., van, I.W.F.J., et al.<\/em> (2020). Targeted Chromatin Conformation (T2C) analysis identifies novel distal neural enhancers of ZEB2 in pluripotent stem cell differentiation. Hum Mol Genet<\/strong>. 29<\/em>, 2535-2550<\/li>\n
  10. Yu, X., Martella, A., Kolovos, P.<\/strong>, Stevens, M., Stadhouders, R., Grosveld, F.G., and Andrieu-Soler, C. (2020). The dynamic emergence of GATA1 complexes identified in in vitro embryonic stem cell differentiation and in vivo mouse fetal liver. Haematologica<\/strong> 105<\/em>, 1802-1812.<\/li>\n
  11. Laugsch, M., Bartusel, M., Rehimi, R., Alirzayeva, H., Karaolidou, A., Crispatzu, G., Zentis, P., Nikolic, M., Bleckwehl, T., Kolovos, P.<\/strong>, et al.<\/em> (2019). Modeling the Pathological Long-Range Regulatory Effects of Human Structural Variation with Patient-Specific hiPSCs. Cell Stem Cell<\/strong> 24<\/em>, 736-752 e712.<\/li>\n
  12. Kolovos, P.#<\/sup><\/strong>, Brouwer, R.W.W., Kockx, C.E.M., Lesnussa, M., Kepper, N., Zuin, J., Imam, A.M.A., van de Werken, H.J.G., Wendt, K.S., Knoch, T.A., et al.<\/em> (2018). Investigation of the spatial structure and interactions of the genome at sub-kilobase-pair resolution using T2C. Nat Protoc<\/strong> 13<\/em>, 459-477 (#<\/sup>Corresponding author<\/strong>)<\/li>\n
  13. Zuin, J., Casa, V., Pozojevic, J., Kolovos, P.<\/strong>, van den Hout, M., van Ijcken, W.F.J., Parenti, I., Braunholz, D., Baron, Y., Watrin, E., et al.<\/em> (2017). Regulation of the cohesin-loading factor NIPBL: Role of the lncRNA NIPBL-AS1 and identification of a distal enhancer element. PLoS Genet<\/strong> 13<\/em>, e1007137.<\/li>\n
  14. Cruz-Molina, S., Respuela, P., Tebartz, C., Kolovos, P.<\/strong>, Nikolic, M., Fueyo, R., van Ijcken, W.F.J., Grosveld, F., Frommolt, P., Bazzi, H., et al.<\/em> (2017). PRC2 Facilitates the Regulatory Topology Required for Poised Enhancer Function during Pluripotent Stem Cell Differentiation. Cell Stem Cell<\/strong> 20<\/em>, 689-705 e689.<\/li>\n
  15. Chondrou, V., Kolovos, P.<\/strong>, Sgourou, A., Kourakli, A., Pavlidaki, A., Kastrinou, V., John, A., Symeonidis, A., Ali, B.R., Papachatzopoulou, A., et al.<\/em> (2017). Whole transcriptome analysis of human erythropoietic cells during ontogenesis suggests a role of VEGFA gene as modulator of fetal hemoglobin and pharmacogenomic biomarker of treatment response to hydroxyurea in beta-type hemoglobinopathy patients. Hum Genomics<\/strong> 11<\/em>, 24.<\/li>\n
  16. Kolovos, P.#<\/sup><\/strong>, Georgomanolis, T., Koeferle, A., Larkin, J.D., Brant, L., Nikolicc, M., Gusmao, E.G., Zirkel, A., Knoch, T.A., van Ijcken, W.F., et al.<\/em> (2016). Binding of nuclear factor kappaB to noncanonical consensus sites reveals its multimodal role during the early inflammatory response. Genome Res<\/strong> 26<\/em>, 1478-1489. (#<\/sup>Corresponding author<\/strong>)<\/li>\n
  17. Brant, L., Georgomanolis, T., Nikolic, M., Brackley, C.A., Kolovos, P.<\/strong>, van Ijcken, W., Grosveld, F.G., Marenduzzo, D., and Papantonis, A. (2016). Exploiting native forces to capture chromosome conformation in mammalian cell nuclei. Mol Syst Biol<\/strong> 12<\/em>, 891.<\/li>\n
  18. Knoch, T.A., Wachsmuth, M., Kepper, N., Lesnussa, M., Abuseiris, A., Ali Imam, A.M., Kolovos, P.<\/strong>, Zuin, J., Kockx, C.E.M., Brouwer, R.W.W., et al.<\/em> (2016). The detailed 3D multi-loop aggregate\/rosette chromatin architecture and functional dynamic organization of the human and mouse genomes. Epigenetics Chromatin<\/strong> 9<\/em>, 58.<\/li>\n
  19. Caputo, L., Witzel, H.R., Kolovos, P.<\/strong>, Cheedipudi, S., Looso, M., Mylona, A., van, I.W.F., Laugwitz, K.L., Evans, S.M., Braun, T., et al.<\/em> (2015). The Isl1\/Ldb1 Complex Orchestrates Genome-wide Chromatin Organization to Instruct Differentiation of Multipotent Cardiac Progenitors. Cell Stem Cell<\/strong> 17<\/em>, 287-299.<\/li>\n
  20. Tresini, M., Warmerdam, D.O., Kolovos, P.<\/strong>, Snijder, L., Vrouwe, M.G., Demmers, J.A., van, I.W.F., Grosveld, F.G., Medema, R.H., Hoeijmakers, J.H., et al.<\/em> (2015). The core spliceosome as target and effector of non-canonical ATM signalling. Nature<\/strong> 523<\/em>, 53-58.<\/li>\n
  21. Ferri, F., Parcelier, A., Petit, V., Gallouet, A.S., Lewandowski, D., Dalloz, M., van den Heuvel, A., Kolovos, P.<\/strong>, Soler, E., Squadrito, M.L., et al.<\/em> (2015). TRIM33 switches off Ifnb1 gene transcription during the late phase of macrophage activation. Nat Commun<\/strong> 6<\/em>, 8900.<\/li>\n
  22. Stadhouders, R., Cico, A., Stephen, T., Thongjuea, S., Kolovos, P.<\/strong>, Baymaz, H.I., Yu, X., Demmers, J., Bezstarosti, K., Maas, A., et al.<\/em> (2015). Control of developmentally primed erythroid genes by combinatorial co-repressor actions. Nat Commun<\/strong> 6<\/em>, 8893.<\/li>\n
  23. Diermeier, S.*, Kolovos, P.*<\/strong>, Heizinger, L., Schwartz, U., Georgomanolis, T., Zirkel, A., Wedemann, G., Grosveld, F., Knoch, T.A., Merkl, R., et al.<\/em> (2014). TNFalpha signalling primes chromatin for NF-kappaB binding and induces rapid and widespread nucleosome repositioning. Genome Biol<\/strong> 15<\/em>, 536. (*Equal contribution<\/strong>)<\/li>\n
  24. Kolovos, P.<\/strong>, van de Werken, H.J., Kepper, N., Zuin, J., Brouwer, R.W., Kockx, C.E., Wendt, K.S., van, I.W.F., Grosveld, F., and Knoch, T.A. (2014). Targeted Chromatin Capture (T2C): a novel high resolution high throughput method to detect genomic interactions and regulatory elements. Epigenetics Chromatin<\/strong> 7<\/em>, 10.<\/li>\n
  25. Zuin, J., Dixon, J.R., van der Reijden, M.I., Ye, Z., Kolovos, P.<\/strong>, Brouwer, R.W., van de Corput, M.P., van de Werken, H.J., Knoch, T.A., van, I.W.F., et al.<\/em> (2014). Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells. Proc Natl Acad Sci<\/strong> U S A 111<\/em>, 996-1001.<\/li>\n
  26. Stadhouders, R., de Bruijn, M.J., Rother, M.B., Yuvaraj, S., Ribeiro de Almeida, C., Kolovos, P.<\/strong>, Van Zelm, M.C., van Ijcken, W., Grosveld, F., Soler, E., et al.<\/em> (2014). Pre-B cell receptor signaling induces immunoglobulin kappa locus accessibility by functional redistribution of enhancer-mediated chromatin interactions. PLoS Biol<\/strong> 12<\/em>, e1001791.<\/li>\n
  27. Stadhouders, R.*, Kolovos, P.*<\/strong>, Brouwer, R.*, Zuin, J., van den Heuvel, A., Kockx, C., Palstra, R.J., Wendt, K.S., Grosveld, F., van Ijcken, W., et al.<\/em> (2013). Multiplexed chromosome conformation capture sequencing for rapid genome-scale high-resolution detection of long-range chromatin interactions. Nat Protoc<\/strong> 8<\/em>, 509-524. (*Equal Contribution<\/strong>)<\/li>\n
  28. Kolovos, P.<\/strong>, Knoch, T.A., Grosveld, F.G., Cook, P.R., and Papantonis, A. (2012). Enhancers and silencers: an integrated and simple model for their function. Epigenetics Chromatin<\/strong> 5<\/em>, 1.<\/li>\n
  29. Stadhouders, R., van den Heuvel, A., Kolovos, P.<\/strong>, Jorna, R., Leslie, K., Grosveld, F., and Soler, E. (2012). Transcription regulation by distal enhancers: who’s in the loop? Transcription<\/strong> 3<\/em>, 181-186.<\/li>\n
  30. van den Driesche, S., Kolovos, P.<\/strong>, Platts, S., Drake, A.J., and Sharpe, R.M. (2012). Inter-relationship between testicular dysgenesis and Leydig cell function in the masculinization programming window in the rat. PLoS One<\/strong> 7<\/em>, e30111.<\/li>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"

    Foutadakis, S., Roupakia, E., Liakopoulos P., Kolovos P.#, Kolettas E.# (2022). An Expanded Interplay Network between NF-\u03baB p65 (RelA) and E2F1 Transcription Factors: Roles in Physiology and Pathology.\u00a0Cancers,\u00a014, 5047. (#Corresponding authors) Kiousi DE., Efstathiou C., Tegopoulos K., Mantzourani I., Alexopoulos A., Plessas S., Kolovos P., Koffa M., Galanis A.\u00a0(2022). Genomic Insight Into\u00a0Lacticaseibacillus paracaseiSP5, Reveals Genes…
    Read more<\/a><\/p>\n","protected":false},"author":16,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-184","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/systems.mbg.duth.gr\/index.php\/wp-json\/wp\/v2\/pages\/184","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/systems.mbg.duth.gr\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/systems.mbg.duth.gr\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/systems.mbg.duth.gr\/index.php\/wp-json\/wp\/v2\/users\/16"}],"replies":[{"embeddable":true,"href":"https:\/\/systems.mbg.duth.gr\/index.php\/wp-json\/wp\/v2\/comments?post=184"}],"version-history":[{"count":67,"href":"https:\/\/systems.mbg.duth.gr\/index.php\/wp-json\/wp\/v2\/pages\/184\/revisions"}],"predecessor-version":[{"id":688,"href":"https:\/\/systems.mbg.duth.gr\/index.php\/wp-json\/wp\/v2\/pages\/184\/revisions\/688"}],"wp:attachment":[{"href":"https:\/\/systems.mbg.duth.gr\/index.php\/wp-json\/wp\/v2\/media?parent=184"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}